# macsyfinder 20220624.dev
# models : TFF-SF-0.0b2
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py39/bin/macsyfinder --db-type gembase --sequence-db tests/data/base/gembase.fasta --models-dir tests/data/models/ --models TFF-SF all --index-dir /tmp/test_macsyfinder_index --relative-path -w 15
# Systems found:

system id = GCF_000005845_T4P_14
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.260

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_6
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_8
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.560

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_12
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.260

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_4
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_5
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_7
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.560

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_3
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_11
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_9
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_000970', 'T4P_pilC', 97), ('GCF_000005845_000980', 'T4P_pilB', 98), ('GCF_000005845_000990', 'T4P_pilA', 99)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_13
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_025680', 'T4P_pilW', 2568), ('GCF_000005845_025690', 'T4P_fimT', 2569)], [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T2SS_2
model = TFF-SF/T2SS
replicon = GCF_000005845
clusters = [('GCF_000005845_026910', 'T2SS_gspM', 2691), ('GCF_000005845_026930', 'T2SS_gspO', 2693)], [('GCF_000005845_029970', 'T2SS_gspC', 2997), ('GCF_000005845_029980', 'T2SS_gspD', 2998), ('GCF_000005845_029990', 'T2SS_gspE', 2999), ('GCF_000005845_030000', 'T2SS_gspF', 3000), ('GCF_000005845_030010', 'T2SS_gspG', 3001), ('GCF_000005845_030020', 'T2SS_gspH', 3002), ('GCF_000005845_030030', 'T2SS_gspI', 3003), ('GCF_000005845_030040', 'T2SS_gspJ', 3004), ('GCF_000005845_030050', 'T2SS_gspK', 3005), ('GCF_000005845_030060', 'T2SS_gspL', 3006), ('GCF_000005845_030070', 'T2SS_gspM', 3007), ('GCF_000005845_030080', 'T2SS_gspO', 3008)]
occ = 1
wholeness = 0.857
loci nb = 2
score = 7.500

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 2 (T2SS_gspO [GCF_000005845_T4P_10, GCF_000005845_T4P_11, GCF_000005845_T4P_12, GCF_000005845_T4P_13, GCF_000005845_T4P_14, GCF_000005845_T4P_7, GCF_000005845_T4P_8, GCF_000005845_T4P_9], T2SS_gspO)

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T2SS_1
model = TFF-SF/T2SS
replicon = GCF_000005845
clusters = [('GCF_000005845_029970', 'T2SS_gspC', 2997), ('GCF_000005845_029980', 'T2SS_gspD', 2998), ('GCF_000005845_029990', 'T2SS_gspE', 2999), ('GCF_000005845_030000', 'T2SS_gspF', 3000), ('GCF_000005845_030010', 'T2SS_gspG', 3001), ('GCF_000005845_030020', 'T2SS_gspH', 3002), ('GCF_000005845_030030', 'T2SS_gspI', 3003), ('GCF_000005845_030040', 'T2SS_gspJ', 3004), ('GCF_000005845_030050', 'T2SS_gspK', 3005), ('GCF_000005845_030060', 'T2SS_gspL', 3006), ('GCF_000005845_030070', 'T2SS_gspM', 3007), ('GCF_000005845_030080', 'T2SS_gspO', 3008)]
occ = 1
wholeness = 0.857
loci nb = 1
score = 9.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T2SS_gspO)

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000005845_T4P_10
model = TFF-SF/T4P
replicon = GCF_000005845
clusters = [('GCF_000005845_030590', 'T4P_pilQ', 3059), ('GCF_000005845_030620', 'T4P_pilN', 3062), ('GCF_000005845_030630', 'T4P_pilM', 3063)], [('GCF_000005845_026740', 'T4P_pilT', 2674)], [('GCF_000005845_026930', 'T2SS_gspO', 2693)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO [GCF_000005845_T2SS_2])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_106
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.700

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_86
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.000

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_127
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 8.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_98
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_114
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_120
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_116
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 7.200

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_82
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_91
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_93
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 6.500

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_99
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_130
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_105
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_131
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_122
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_107
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_119
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 5.200

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_85
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_123
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 4.850

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_87
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_95
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 4.500

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_108
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 4.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_109
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 3.700

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_133
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 3.550

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_115
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 3.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_125
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 2.850

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_92
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 2.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_117
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_001050', 'T4P_fimT', 4347), ('GCF_000006725_001060', 'T4P_pilV', 4348), ('GCF_000006725_001070', 'T4P_pilW', 4349), ('GCF_000006725_001080', 'T4P_pilX', 4350), ('GCF_000006725_001090', 'T4P_pilY', 4351), ('GCF_000006725_001100', 'T4P_pilE', 4352)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 1.700

mandatory genes:
	- T4P_pilE: 3 (T4P_pilE, T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 2 (T4P_pilV, T4P_pilV)
	- T4P_pilY: 2 (T4P_pilY, T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 2 (T4P_pilX, T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_118
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_110
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_94
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_112
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.200

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_88
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_101
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_132
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_90
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_111
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_83
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_124
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 6.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_129
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_89
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_102
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_121
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_128
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_84
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_100
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_126
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_000270', 'T4P_pilT', 4269)], [('GCF_000006725_022640', 'T4P_pilA', 6506)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_96
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_002760', 'T4P_pilN', 4518), ('GCF_000006725_002770', 'T4P_pilO', 4519), ('GCF_000006725_002780', 'T4P_pilP', 4520), ('GCF_000006725_002790', 'T4P_pilQ', 4521)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_113
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_103
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_003310', 'T4P_fimT', 4573), ('GCF_000006725_003320', 'T4P_pilX', 4574)], [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T2SS_81
model = TFF-SF/T2SS
replicon = GCF_000006725
clusters = [('GCF_000006725_008990', 'T2SS_gspF', 5141), ('GCF_000006725_009000', 'T2SS_gspH', 5142), ('GCF_000006725_009010', 'T2SS_gspI', 5143), ('GCF_000006725_009020', 'T2SS_gspJ', 5144), ('GCF_000006725_009030', 'T2SS_gspK', 5145), ('GCF_000006725_009040', 'T2SS_gspM', 5146), ('GCF_000006725_009050', 'T2SS_gspN', 5147), ('GCF_000006725_009060', 'T2SS_gspD', 5148)], [('GCF_000006725_014570', 'T4P_pilD', 5699)], [('GCF_000006725_018700', 'T2SS_gspE', 6112)]
occ = 1
wholeness = 0.714
loci nb = 1
score = 6.260

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 0 ()
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006725_T4P_101, GCF_000006725_T4P_103, GCF_000006725_T4P_104, GCF_000006725_T4P_106, GCF_000006725_T4P_108, GCF_000006725_T4P_109, GCF_000006725_T4P_110, GCF_000006725_T4P_112, GCF_000006725_T4P_113, GCF_000006725_T4P_114, GCF_000006725_T4P_116, GCF_000006725_T4P_117, GCF_000006725_T4P_118, GCF_000006725_T4P_119, GCF_000006725_T4P_83, GCF_000006725_T4P_86, GCF_000006725_T4P_88, GCF_000006725_T4P_90, GCF_000006725_T4P_91, GCF_000006725_T4P_93, GCF_000006725_T4P_94, GCF_000006725_T4P_95, GCF_000006725_T4P_97, GCF_000006725_T4P_99])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_104
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_019480', 'T4P_pilV', 6190), ('GCF_000006725_019490', 'T4P_pilY', 6191), ('GCF_000006725_019500', 'T4P_pilE', 6192)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.700

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006725_T4P_97
model = TFF-SF/T4P
replicon = GCF_000006725
clusters = [('GCF_000006725_014570', 'T4P_pilD', 5699), ('GCF_000006725_014580', 'T4P_pilA', 5700), ('GCF_000006725_014590', 'T4P_pilE', 5701), ('GCF_000006725_014600', 'T4P_pilB', 5702)], [('GCF_000006725_000270', 'T4P_pilT', 4269)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006725_T2SS_81])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_MSH_15
model = TFF-SF/MSH
replicon = GCF_000006745
clusters = [('GCF_000006745_003630', 'MSH_mshI', 6931), ('GCF_000006745_003640', 'MSH_mshJ', 6932), ('GCF_000006745_003650', 'MSH_mshK', 6933), ('GCF_000006745_003660', 'MSH_mshL', 6934), ('GCF_000006745_003670', 'MSH_mshM', 6935), ('GCF_000006745_003680', 'MSH_mshN', 6936), ('GCF_000006745_003690', 'MSH_mshE', 6937), ('GCF_000006745_003700', 'MSH_mshG', 6938), ('GCF_000006745_003710', 'MSH_mshF', 6939), ('GCF_000006745_003720', 'MSH_mshB', 6940), ('GCF_000006745_003730', 'MSH_mshA', 6941), ('GCF_000006745_003740', 'MSH_mshC', 6942), ('GCF_000006745_003750', 'MSH_mshD', 6943), ('GCF_000006745_003760', 'MSH_mshO', 6944), ('GCF_000006745_003770', 'MSH_mshP', 6945), ('GCF_000006745_003780', 'MSH_mshQ', 6946)]
occ = 1
wholeness = 0.941
loci nb = 1
score = 10.500

mandatory genes:
	- MSH_mshA: 1 (MSH_mshA)
	- MSH_mshE: 1 (MSH_mshE)
	- MSH_mshG: 1 (MSH_mshG)
	- MSH_mshL: 1 (MSH_mshL)
	- MSH_mshM: 1 (MSH_mshM)

accessory genes:
	- MSH_mshB: 1 (MSH_mshB)
	- MSH_mshC: 1 (MSH_mshC)
	- MSH_mshD: 1 (MSH_mshD)
	- MSH_mshF: 1 (MSH_mshF)
	- MSH_mshI: 1 (MSH_mshI)
	- MSH_mshI2: 0 ()
	- MSH_mshJ: 1 (MSH_mshJ)
	- MSH_mshK: 1 (MSH_mshK)
	- MSH_mshN: 1 (MSH_mshN)
	- MSH_mshO: 1 (MSH_mshO)
	- MSH_mshQ: 1 (MSH_mshQ)
	- MSH_mshP: 1 (MSH_mshP)

neutral genes:

============================================================
system id = GCF_000006745_T4P_27
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.944
loci nb = 4
score = 12.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_25
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 9.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_24
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_23
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_T4P_19
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_18
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_004240', 'T4P_pilT', 6992), ('GCF_000006745_004250', 'T4P_pilU', 6993)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_T4bP_28
model = TFF-SF/T4bP
replicon = GCF_000006745
clusters = [('GCF_000006745_007540', 'T4bP_pilA', 7322), ('GCF_000006745_007550', 'T4bP_pilE', 7323), ('GCF_000006745_007570', 'T4bP_pilQ', 7325), ('GCF_000006745_007610', 'T4bP_pilB', 7329), ('GCF_000006745_007620', 'T4bP_pilC', 7330), ('GCF_000006745_007650', 'T4bP_pilD', 7333)]
occ = 1
wholeness = 0.750
loci nb = 1
score = 5.500

mandatory genes:
	- T4bP_pilA: 1 (T4bP_pilA)
	- T4bP_pilB: 1 (T4bP_pilB)
	- T4bP_pilC: 1 (T4bP_pilC)
	- T4bP_pilD: 1 (T4bP_pilD)
	- T4bP_pilQ: 1 (T4bP_pilQ)
	- T4bP_pilT: 0 ()

accessory genes:
	- T4bP_pilE: 1 (T4bP_pilE)
	- T4bP_pilP: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_T4P_26
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.833
loci nb = 3
score = 11.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_21
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T4P_20
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_007820', 'T4P_pilE', 7350), ('GCF_000006745_007830', 'T4P_fimT', 7351), ('GCF_000006745_007840', 'T4P_pilW', 7352), ('GCF_000006745_007850', 'T4P_pilX', 7353), ('GCF_000006745_007860', 'T4P_pilV', 7354)], [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_T4P_22
model = TFF-SF/T4P
replicon = GCF_000006745
clusters = [('GCF_000006745_021950', 'T4P_pilA', 8763), ('GCF_000006745_021960', 'T4P_pilB', 8764), ('GCF_000006745_021970', 'T4P_pilC', 8765), ('GCF_000006745_021980', 'T4P_pilD', 8766)], [('GCF_000006745_023840', 'MSH_mshM', 8952), ('GCF_000006745_023870', 'T4P_pilQ', 8955), ('GCF_000006745_023880', 'T4P_pilP', 8956), ('GCF_000006745_023890', 'T4P_pilO', 8957), ('GCF_000006745_023900', 'T4P_pilN', 8958), ('GCF_000006745_023910', 'T4P_pilM', 8959)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006745_T2SS_17])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006745_T2SS_17
model = TFF-SF/T2SS
replicon = GCF_000006745
clusters = [('GCF_000006745_024730', 'T2SS_gspN', 9041), ('GCF_000006745_024740', 'T2SS_gspM', 9042), ('GCF_000006745_024750', 'T2SS_gspL', 9043), ('GCF_000006745_024760', 'T2SS_gspK', 9044), ('GCF_000006745_024770', 'T2SS_gspJ', 9045), ('GCF_000006745_024780', 'T2SS_gspI', 9046), ('GCF_000006745_024790', 'T2SS_gspH', 9047), ('GCF_000006745_024800', 'T2SS_gspG', 9048), ('GCF_000006745_024810', 'T2SS_gspF', 9049), ('GCF_000006745_024820', 'T2SS_gspE', 9050), ('GCF_000006745_024830', 'T2SS_gspC', 9051)], [('GCF_000006745_021980', 'T4P_pilD', 8766)]
occ = 1
wholeness = 0.857
loci nb = 1
score = 8.060

mandatory genes:
	- T2SS_gspD: 0 ()
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006745_T4P_18, GCF_000006745_T4P_20, GCF_000006745_T4P_22, GCF_000006745_T4P_23, GCF_000006745_T4P_25, GCF_000006745_T4P_26, GCF_000006745_T4P_27])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006745_T2SS_16
model = TFF-SF/T2SS
replicon = GCF_000006745
clusters = [('GCF_000006745_024730', 'T2SS_gspN', 9041), ('GCF_000006745_024740', 'T2SS_gspM', 9042), ('GCF_000006745_024750', 'T2SS_gspL', 9043), ('GCF_000006745_024760', 'T2SS_gspK', 9044), ('GCF_000006745_024770', 'T2SS_gspJ', 9045), ('GCF_000006745_024780', 'T2SS_gspI', 9046), ('GCF_000006745_024790', 'T2SS_gspH', 9047), ('GCF_000006745_024800', 'T2SS_gspG', 9048), ('GCF_000006745_024810', 'T2SS_gspF', 9049), ('GCF_000006745_024820', 'T2SS_gspE', 9050), ('GCF_000006745_024830', 'T2SS_gspC', 9051)]
occ = 1
wholeness = 0.786
loci nb = 1
score = 7.500

mandatory genes:
	- T2SS_gspD: 0 ()
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T4P_65
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_003910', 'T4P_pilT', 10463), ('GCF_000006765_003920', 'T4P_pilU', 10464)], [('GCF_000006765_044710', 'T4P_pilA', 14543), ('GCF_000006765_044720', 'T4P_pilB', 14544), ('GCF_000006765_044730', 'T4P_pilD', 14545)], [('GCF_000006765_044940', 'T4P_fimT', 14566), ('GCF_000006765_044950', 'T4P_fimT', 14567), ('GCF_000006765_044960', 'T4P_pilV', 14568), ('GCF_000006765_044970', 'T4P_pilW', 14569), ('GCF_000006765_044980', 'T4P_pilX', 14570), ('GCF_000006765_044990', 'T4P_pilY', 14571), ('GCF_000006765_045010', 'T4P_pilE', 14573)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.944
loci nb = 4
score = 12.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006765_T2SS_43, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_48, GCF_000006765_T2SS_49, GCF_000006765_T2SS_50, GCF_000006765_T2SS_51, GCF_000006765_T2SS_52, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_55, GCF_000006765_T2SS_56, GCF_000006765_T2SS_57])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T4P_63
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_003910', 'T4P_pilT', 10463), ('GCF_000006765_003920', 'T4P_pilU', 10464)], [('GCF_000006765_044940', 'T4P_fimT', 14566), ('GCF_000006765_044950', 'T4P_fimT', 14567), ('GCF_000006765_044960', 'T4P_pilV', 14568), ('GCF_000006765_044970', 'T4P_pilW', 14569), ('GCF_000006765_044980', 'T4P_pilX', 14570), ('GCF_000006765_044990', 'T4P_pilY', 14571), ('GCF_000006765_045010', 'T4P_pilE', 14573)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T4P_62
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_003910', 'T4P_pilT', 10463), ('GCF_000006765_003920', 'T4P_pilU', 10464)], [('GCF_000006765_044710', 'T4P_pilA', 14543), ('GCF_000006765_044720', 'T4P_pilB', 14544), ('GCF_000006765_044730', 'T4P_pilD', 14545)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006765_T2SS_43, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_48, GCF_000006765_T2SS_49, GCF_000006765_T2SS_50, GCF_000006765_T2SS_51, GCF_000006765_T2SS_52, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_55, GCF_000006765_T2SS_56, GCF_000006765_T2SS_57])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T4P_61
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_003910', 'T4P_pilT', 10463), ('GCF_000006765_003920', 'T4P_pilU', 10464)], [('GCF_000006765_044710', 'T4P_pilA', 14543), ('GCF_000006765_044720', 'T4P_pilB', 14544), ('GCF_000006765_044730', 'T4P_pilD', 14545)], [('GCF_000006765_044940', 'T4P_fimT', 14566), ('GCF_000006765_044950', 'T4P_fimT', 14567), ('GCF_000006765_044960', 'T4P_pilV', 14568), ('GCF_000006765_044970', 'T4P_pilW', 14569), ('GCF_000006765_044980', 'T4P_pilX', 14570), ('GCF_000006765_044990', 'T4P_pilY', 14571), ('GCF_000006765_045010', 'T4P_pilE', 14573)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [GCF_000006765_T2SS_43, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_48, GCF_000006765_T2SS_49, GCF_000006765_T2SS_50, GCF_000006765_T2SS_51, GCF_000006765_T2SS_52, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_55, GCF_000006765_T2SS_56, GCF_000006765_T2SS_57])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T4P_58
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_003910', 'T4P_pilT', 10463), ('GCF_000006765_003920', 'T4P_pilU', 10464)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T2SS_43
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.786
loci nb = 1
score = 8.060

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_29
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)]
occ = 1
wholeness = 0.714
loci nb = 1
score = 7.500

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_46
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.786
loci nb = 2
score = 7.060

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_31
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)]
occ = 1
wholeness = 0.714
loci nb = 2
score = 6.500

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_47
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.786
loci nb = 2
score = 4.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_32
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)]
occ = 2
wholeness = 0.714
loci nb = 2
score = 4.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_52
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.786
loci nb = 3
score = 3.560

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_37
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)]
occ = 2
wholeness = 0.714
loci nb = 3
score = 3.000

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_48
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.857
loci nb = 2
score = 1.060

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_33
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 2
wholeness = 0.786
loci nb = 2
score = 0.500

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_53
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.857
loci nb = 3
score = 0.060

mandatory genes:
	- T2SS_gspD: 3 (T2SS_gspD, T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 3 (T2SS_gspC, T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_38
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 2
wholeness = 0.786
loci nb = 3
score = -0.500

mandatory genes:
	- T2SS_gspD: 3 (T2SS_gspD, T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 3 (T2SS_gspC, T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_54
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.857
loci nb = 3
score = -2.440

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 3 (T2SS_gspE, T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 3 (T2SS_gspF, T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 3 (T2SS_gspG, T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 4 (T2SS_gspH, T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 3 (T2SS_gspI, T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_39
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 2
wholeness = 0.786
loci nb = 3
score = -3.000

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 3 (T2SS_gspE, T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 3 (T2SS_gspF, T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 3 (T2SS_gspG, T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 4 (T2SS_gspH, T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 3 (T2SS_gspI, T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_56
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 3
wholeness = 0.857
loci nb = 4
score = -3.440

mandatory genes:
	- T2SS_gspD: 3 (T2SS_gspD, T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 3 (T2SS_gspE, T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 3 (T2SS_gspF, T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 3 (T2SS_gspG, T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 3 (T2SS_gspC, T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 4 (T2SS_gspH, T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 3 (T2SS_gspI, T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_41
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_006700', 'T2SS_gspJ', 10742), ('GCF_000006765_006710', 'T2SS_gspH', 10743), ('GCF_000006765_006720', 'T2SS_gspC', 10744), ('GCF_000006765_006730', 'T2SS_gspI', 10745), ('GCF_000006765_006740', 'T2SS_gspG', 10746), ('GCF_000006765_006750', 'T2SS_gspK', 10747), ('GCF_000006765_006770', 'T2SS_gspM', 10749), ('GCF_000006765_006780', 'T2SS_gspD', 10750), ('GCF_000006765_006790', 'T2SS_gspE', 10751), ('GCF_000006765_006800', 'T2SS_gspF', 10752)], [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 3
wholeness = 0.786
loci nb = 4
score = -4.000

mandatory genes:
	- T2SS_gspD: 3 (T2SS_gspD, T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 3 (T2SS_gspE, T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 3 (T2SS_gspF, T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 3 (T2SS_gspG, T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 3 (T2SS_gspC, T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 2 (T2SS_gspM, T2SS_gspM)
	- T2SS_gspH: 4 (T2SS_gspH, T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 3 (T2SS_gspI, T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 2 (T2SS_gspJ, T2SS_gspJ)
	- T2SS_gspK: 2 (T2SS_gspK, T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_50
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.857
loci nb = 2
score = 7.560

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_35
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 1
wholeness = 0.786
loci nb = 2
score = 7.000

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_49
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.571
loci nb = 2
score = 6.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 0 ()
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_34
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 0 ()
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_55
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.857
loci nb = 3
score = 4.060

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_40
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_018460', 'T2SS_gspC', 11918), ('GCF_000006765_018470', 'T2SS_gspD', 11919)], [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 2
wholeness = 0.786
loci nb = 3
score = 3.500

mandatory genes:
	- T2SS_gspD: 2 (T2SS_gspD, T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 2 (T2SS_gspC, T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_57
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_013660', 'T2SS_gspD', 11438)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.500
loci nb = 1
score = 5.260

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 0 ()
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_51
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 2
wholeness = 0.857
loci nb = 2
score = 5.060

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_42
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_013660', 'T2SS_gspD', 11438)]
occ = 1
wholeness = 0.429
loci nb = 1
score = 4.700

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 0 ()
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_44
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.429
loci nb = 1
score = 4.560

mandatory genes:
	- T2SS_gspD: 0 ()
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 2 (T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 0 ()
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_36
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_026370', 'T2SS_gspH', 12709), ('GCF_000006765_026380', 'T2SS_gspI', 12710), ('GCF_000006765_026390', 'T2SS_gspH', 12711), ('GCF_000006765_026400', 'T2SS_gspG', 12712), ('GCF_000006765_026410', 'T2SS_gspF', 12713), ('GCF_000006765_026420', 'T2SS_gspE', 12714)], [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 2
wholeness = 0.786
loci nb = 2
score = 4.500

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 2 (T2SS_gspE, T2SS_gspE)
	- T2SS_gspF: 2 (T2SS_gspF, T2SS_gspF)
	- T2SS_gspG: 2 (T2SS_gspG, T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 3 (T2SS_gspH, T2SS_gspH, T2SS_gspH)
	- T2SS_gspI: 2 (T2SS_gspI, T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_45
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)], [('GCF_000006765_044730', 'T4P_pilD', 14545)]
occ = 1
wholeness = 0.857
loci nb = 1
score = 8.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T4P_pilD [GCF_000006765_T4P_59, GCF_000006765_T4P_61, GCF_000006765_T4P_62, GCF_000006765_T4P_64, GCF_000006765_T4P_65])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_T2SS_30
model = TFF-SF/T2SS
replicon = GCF_000006765
clusters = [('GCF_000006765_030540', 'T2SS_gspM', 13126), ('GCF_000006765_030550', 'T2SS_gspL', 13127), ('GCF_000006765_030560', 'T2SS_gspK', 13128), ('GCF_000006765_030570', 'T2SS_gspJ', 13129), ('GCF_000006765_030580', 'T2SS_gspI', 13130), ('GCF_000006765_030590', 'T2SS_gspH', 13131), ('GCF_000006765_030600', 'T2SS_gspG', 13132), ('GCF_000006765_030610', 'T2SS_gspF', 13133), ('GCF_000006765_030620', 'T2SS_gspE', 13134), ('GCF_000006765_030630', 'T2SS_gspC', 13135), ('GCF_000006765_030640', 'T2SS_gspD', 13136)]
occ = 1
wholeness = 0.786
loci nb = 1
score = 8.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006765_Tad_66
model = TFF-SF/Tad
replicon = GCF_000006765
clusters = [('GCF_000006765_042420', 'Tad_tadV', 14314), ('GCF_000006765_042460', 'Tad_tadD', 14318), ('GCF_000006765_042470', 'Tad_tadC', 14319), ('GCF_000006765_042480', 'Tad_tadB', 14320), ('GCF_000006765_042490', 'Tad_tadA', 14321), ('GCF_000006765_042500', 'Tad_tadZ', 14322), ('GCF_000006765_042510', 'Tad_rcpA', 14323), ('GCF_000006765_042520', 'Tad_rcpC', 14324), ('GCF_000006765_042530', 'Tad_flp', 14325)]
occ = 1
wholeness = 0.750
loci nb = 1
score = 8.000

mandatory genes:
	- Tad_rcpA: 1 (Tad_rcpA)
	- Tad_tadA: 1 (Tad_tadA)
	- Tad_tadB: 1 (Tad_tadB)
	- Tad_tadC: 1 (Tad_tadC)
	- Tad_tadV: 1 (Tad_tadV)
	- Tad_tadZ: 1 (Tad_tadZ)
	- Tad_flp: 1 (Tad_flp)

accessory genes:
	- Tad_tadE: 0 ()
	- Tad_tadF: 0 ()
	- Tad_tadD: 1 (Tad_tadD)
	- Tad_rcpB: 0 ()
	- Tad_rcpC: 1 (Tad_rcpC)

neutral genes:

============================================================
system id = GCF_000006765_T4P_64
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_044710', 'T4P_pilA', 14543), ('GCF_000006765_044720', 'T4P_pilB', 14544), ('GCF_000006765_044730', 'T4P_pilD', 14545)], [('GCF_000006765_044940', 'T4P_fimT', 14566), ('GCF_000006765_044950', 'T4P_fimT', 14567), ('GCF_000006765_044960', 'T4P_pilV', 14568), ('GCF_000006765_044970', 'T4P_pilW', 14569), ('GCF_000006765_044980', 'T4P_pilX', 14570), ('GCF_000006765_044990', 'T4P_pilY', 14571), ('GCF_000006765_045010', 'T4P_pilE', 14573)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.833
loci nb = 3
score = 10.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006765_T2SS_43, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_48, GCF_000006765_T2SS_49, GCF_000006765_T2SS_50, GCF_000006765_T2SS_51, GCF_000006765_T2SS_52, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_55, GCF_000006765_T2SS_56, GCF_000006765_T2SS_57])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T4P_59
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_044710', 'T4P_pilA', 14543), ('GCF_000006765_044720', 'T4P_pilB', 14544), ('GCF_000006765_044730', 'T4P_pilD', 14545)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [GCF_000006765_T2SS_43, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_48, GCF_000006765_T2SS_49, GCF_000006765_T2SS_50, GCF_000006765_T2SS_51, GCF_000006765_T2SS_52, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_55, GCF_000006765_T2SS_56, GCF_000006765_T2SS_57])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006765_T4P_60
model = TFF-SF/T4P
replicon = GCF_000006765
clusters = [('GCF_000006765_044940', 'T4P_fimT', 14566), ('GCF_000006765_044950', 'T4P_fimT', 14567), ('GCF_000006765_044960', 'T4P_pilV', 14568), ('GCF_000006765_044970', 'T4P_pilW', 14569), ('GCF_000006765_044980', 'T4P_pilX', 14570), ('GCF_000006765_044990', 'T4P_pilY', 14571), ('GCF_000006765_045010', 'T4P_pilE', 14573)], [('GCF_000006765_049770', 'MSH_mshM', 15049), ('GCF_000006765_049800', 'T4P_pilQ', 15052), ('GCF_000006765_049810', 'T4P_pilP', 15053), ('GCF_000006765_049820', 'T4P_pilO', 15054), ('GCF_000006765_049830', 'T4P_pilN', 15055), ('GCF_000006765_049840', 'T4P_pilM', 15056)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = GCF_000006845_T4P_74
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_004190', 'T4P_fimT', 16063), ('GCF_000006845_004200', 'T4P_pilV', 16064), ('GCF_000006845_004210', 'T4P_pilW', 16065), ('GCF_000006845_004220', 'T4P_pilX', 16066), ('GCF_000006845_004230', 'T4P_pilA', 16067)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 11.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_70
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_004190', 'T4P_fimT', 16063), ('GCF_000006845_004200', 'T4P_pilV', 16064), ('GCF_000006845_004210', 'T4P_pilW', 16065), ('GCF_000006845_004220', 'T4P_pilX', 16066), ('GCF_000006845_004230', 'T4P_pilA', 16067)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_78
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)], [('GCF_000006845_012440', 'T4P_pilA', 16888)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_72
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_71
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_004190', 'T4P_fimT', 16063), ('GCF_000006845_004200', 'T4P_pilV', 16064), ('GCF_000006845_004210', 'T4P_pilW', 16065), ('GCF_000006845_004220', 'T4P_pilX', 16066), ('GCF_000006845_004230', 'T4P_pilA', 16067)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_75
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_012440', 'T4P_pilA', 16888)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_67
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_76
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)], [('GCF_000006845_012440', 'T4P_pilA', 16888)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_68
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_001030', 'T4P_pilQ', 15747), ('GCF_000006845_001040', 'T4P_pilP', 15748), ('GCF_000006845_001050', 'T4P_pilO', 15749), ('GCF_000006845_001060', 'T4P_pilN', 15750), ('GCF_000006845_001070', 'T4P_pilM', 15751)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_73
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_004190', 'T4P_fimT', 16063), ('GCF_000006845_004200', 'T4P_pilV', 16064), ('GCF_000006845_004210', 'T4P_pilW', 16065), ('GCF_000006845_004220', 'T4P_pilX', 16066), ('GCF_000006845_004230', 'T4P_pilA', 16067)], [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_77
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)], [('GCF_000006845_012440', 'T4P_pilA', 16888)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006845_T4P_69
model = TFF-SF/T4P
replicon = GCF_000006845
clusters = [('GCF_000006845_014270', 'T4P_pilC', 17071), ('GCF_000006845_014280', 'T4P_pilD', 17072), ('GCF_000006845_014310', 'T4P_pilB', 17075)], [('GCF_000006845_016430', 'T4P_pilT', 17287), ('GCF_000006845_016440', 'T4P_pilU', 17288)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD)

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006905_T2SS_79
model = TFF-SF/T2SS
replicon = GCF_000006905
clusters = [('GCF_000006905_001710', 'T2SS_gspC', 17701), ('GCF_000006905_001720', 'T2SS_gspD', 17702), ('GCF_000006905_001730', 'T2SS_gspE', 17703), ('GCF_000006905_001740', 'T2SS_gspF', 17704), ('GCF_000006905_001750', 'T2SS_gspG', 17705), ('GCF_000006905_001760', 'T2SS_gspH', 17706), ('GCF_000006905_001770', 'T2SS_gspI', 17707), ('GCF_000006905_001780', 'T2SS_gspJ', 17708), ('GCF_000006905_001790', 'T2SS_gspK', 17709), ('GCF_000006905_001800', 'T2SS_gspL', 17710), ('GCF_000006905_001810', 'T2SS_gspM', 17711), ('GCF_000006905_001820', 'T2SS_gspN', 17712), ('GCF_000006905_001830', 'T2SS_gspO', 17713)]
occ = 1
wholeness = 0.929
loci nb = 1
score = 9.500

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 1 (T2SS_gspC)
	- T2SS_gspO: 1 (T2SS_gspO)

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = GCF_000006905_Tad_80
model = TFF-SF/Tad
replicon = GCF_000006905
clusters = [('GCF_000006905_029110', 'Tad_tadD', 20441), ('GCF_000006905_029130', 'Tad_tadC', 20443), ('GCF_000006905_029140', 'Tad_tadB', 20444), ('GCF_000006905_029150', 'Tad_tadA', 20445), ('GCF_000006905_029160', 'Tad_tadZ', 20446), ('GCF_000006905_029180', 'Tad_rcpA', 20448), ('GCF_000006905_029190', 'Tad_rcpC', 20449), ('GCF_000006905_029200', 'Tad_tadV', 20450), ('GCF_000006905_029210', 'Tad_flp', 20451), ('GCF_000006905_029230', 'Tad_tadE', 20453), ('GCF_000006905_029240', 'Tad_tadE', 20454)]
occ = 1
wholeness = 0.833
loci nb = 1
score = 8.500

mandatory genes:
	- Tad_rcpA: 1 (Tad_rcpA)
	- Tad_tadA: 1 (Tad_tadA)
	- Tad_tadB: 1 (Tad_tadB)
	- Tad_tadC: 1 (Tad_tadC)
	- Tad_tadV: 1 (Tad_tadV)
	- Tad_tadZ: 1 (Tad_tadZ)
	- Tad_flp: 1 (Tad_flp)

accessory genes:
	- Tad_tadE: 2 (Tad_tadE, Tad_tadE)
	- Tad_tadF: 0 ()
	- Tad_tadD: 1 (Tad_tadD)
	- Tad_rcpB: 0 ()
	- Tad_rcpC: 1 (Tad_rcpC)

neutral genes:

============================================================
system id = GCF_000006925_T4P_134
model = TFF-SF/T4P
replicon = GCF_000006925
clusters = [('GCF_000006925_001000', 'T4P_pilC', 21367), ('GCF_000006925_001010', 'T4P_pilA', 21368)], [('GCF_000006925_030310', 'T4P_pilQ', 24298), ('GCF_000006925_030330', 'T4P_pilN', 24300), ('GCF_000006925_030340', 'T4P_pilM', 24301)], [('GCF_000006925_026070', 'T4P_pilT', 23874)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_146
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.260

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_138
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_140
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.560

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_144
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.260

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_136
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_137
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_139
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.560

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_135
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_143
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_141
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_002000', 'T4P_pilC', 25780), ('GCF_000006945_002010', 'T4P_pilB', 25781), ('GCF_000006945_002020', 'T4P_pilA', 25782)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_145
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_029190', 'T4P_pilW', 28499), ('GCF_000006945_029200', 'T4P_fimT', 28500)], [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = GCF_000006945_T4P_142
model = TFF-SF/T4P
replicon = GCF_000006945
clusters = [('GCF_000006945_033900', 'T4P_pilQ', 28970), ('GCF_000006945_033930', 'T4P_pilN', 28973), ('GCF_000006945_033940', 'T4P_pilM', 28974)], [('GCF_000006945_030160', 'T4P_pilT', 28596)], [('GCF_000006945_033450', 'T2SS_gspO', 28925)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.760

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 0 ()
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T2SS_gspO)

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilT' and 8 potential systems [GCF_000005845_T4P_14, GCF_000005845_T4P_6, GCF_000005845_T4P_12, GCF_000005845_T4P_5, GCF_000005845_T4P_11, GCF_000005845_T4P_9, GCF_000005845_T4P_13, GCF_000005845_T4P_10]
# WARNING Loner: there is only 2 occurrence(s) of loner 'T2SS_gspO' and 8 potential systems [GCF_000005845_T4P_14, GCF_000005845_T4P_8, GCF_000005845_T4P_12, GCF_000005845_T4P_7, GCF_000005845_T4P_11, GCF_000005845_T4P_9, GCF_000005845_T4P_13, GCF_000005845_T4P_10]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilT' and 32 potential systems [GCF_000006725_T4P_106, GCF_000006725_T4P_127, GCF_000006725_T4P_98, GCF_000006725_T4P_114, GCF_000006725_T4P_116, GCF_000006725_T4P_99, GCF_000006725_T4P_130, GCF_000006725_T4P_105, GCF_000006725_T4P_131, GCF_000006725_T4P_107, GCF_000006725_T4P_119, GCF_000006725_T4P_108, GCF_000006725_T4P_109, GCF_000006725_T4P_133, GCF_000006725_T4P_115, GCF_000006725_T4P_117, GCF_000006725_T4P_118, GCF_000006725_T4P_110, GCF_000006725_T4P_112, GCF_000006725_T4P_101, GCF_000006725_T4P_132, GCF_000006725_T4P_111, GCF_000006725_T4P_129, GCF_000006725_T4P_102, GCF_000006725_T4P_128, GCF_000006725_T4P_100, GCF_000006725_T4P_126, GCF_000006725_T4P_96, GCF_000006725_T4P_113, GCF_000006725_T4P_103, GCF_000006725_T4P_104, GCF_000006725_T4P_97]
# WARNING Loner: there is only 2 occurrence(s) of loner 'T4P_pilA' and 14 potential systems [GCF_000006725_T4P_127, GCF_000006725_T4P_120, GCF_000006725_T4P_130, GCF_000006725_T4P_131, GCF_000006725_T4P_122, GCF_000006725_T4P_123, GCF_000006725_T4P_133, GCF_000006725_T4P_125, GCF_000006725_T4P_132, GCF_000006725_T4P_124, GCF_000006725_T4P_129, GCF_000006725_T4P_121, GCF_000006725_T4P_128, GCF_000006725_T4P_126]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilD' and 15 potential systems [GCF_000006765_T2SS_43, GCF_000006765_T2SS_46, GCF_000006765_T2SS_47, GCF_000006765_T2SS_52, GCF_000006765_T2SS_48, GCF_000006765_T2SS_53, GCF_000006765_T2SS_54, GCF_000006765_T2SS_56, GCF_000006765_T2SS_50, GCF_000006765_T2SS_49, GCF_000006765_T2SS_55, GCF_000006765_T2SS_57, GCF_000006765_T2SS_51, GCF_000006765_T2SS_44, GCF_000006765_T2SS_45]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T2SS_gspD' and 2 potential systems [GCF_000006765_T2SS_57, GCF_000006765_T2SS_42]
# WARNING Loner: there is only 2 occurrence(s) of loner 'T4P_pilA' and 4 potential systems [GCF_000006845_T4P_78, GCF_000006845_T4P_75, GCF_000006845_T4P_76, GCF_000006845_T4P_77]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilT' and 8 potential systems [GCF_000006945_T4P_146, GCF_000006945_T4P_138, GCF_000006945_T4P_144, GCF_000006945_T4P_137, GCF_000006945_T4P_143, GCF_000006945_T4P_141, GCF_000006945_T4P_145, GCF_000006945_T4P_142]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T2SS_gspO' and 8 potential systems [GCF_000006945_T4P_146, GCF_000006945_T4P_140, GCF_000006945_T4P_144, GCF_000006945_T4P_139, GCF_000006945_T4P_143, GCF_000006945_T4P_141, GCF_000006945_T4P_145, GCF_000006945_T4P_142]
